Initial responses of the trap-crop, Solanum sisymbriifolium, to Globodera pallida invasions.
Identifieur interne : 000128 ( Main/Exploration ); précédent : 000127; suivant : 000129Initial responses of the trap-crop, Solanum sisymbriifolium, to Globodera pallida invasions.
Auteurs : Alexander Q. Wixom [États-Unis] ; N Carol Casavant [États-Unis] ; Timothy J. Sonnen [États-Unis] ; Joseph C. Kuhl [États-Unis] ; Fangming Xiao [États-Unis] ; Louise-Marie Dandurand [États-Unis] ; Allan B. Caplan [États-Unis]Source :
- The plant genome [ 1940-3372 ] ; 2020.
Abstract
Many researchers today are looking for mechanisms underlying plant defenses against nematodes by identifying differentially expressed genes in domesticated hosts. In order to provide a different perspective, we analyzed the root transcriptome of an undomesticated non-host species, Solanum sisymbriifolium Lamark (SSI) before and after Globodera pallida infection. Utilizing RNAseq analyses, we identified changes in the expression of 277 transcripts. Many of these genes were not annotated; however, the annotated set included peroxidases, reactive oxygen species-producing proteins, and regulators of cell death. Importantly, 60% of the nematode-responsive genes did not respond to physical damage to root tissues, or to exogenous treatments with either salicylic acid or methyl jasmonate. Based on this, we speculate that the majority of changes in SSI gene expression were promoted by either nematode effectors, pathogen-associated molecular patterns (PAMPs), or by exposure to untested endogenous signaling molecules such as ethylene, or by exposure to multiple stimuli. This study incorporates our findings into a model that accounts for part of this plant's unusual resistance to nematodes.
DOI: 10.1002/tpg2.20016
PubMed: 33016605
Affiliations:
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Wixom</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333</wicri:regionArea><wicri:noRegion>83844-2333</wicri:noRegion></affiliation></author><author><name sortKey="Casavant, N Carol" sort="Casavant, N Carol" uniqKey="Casavant N" first="N Carol" last="Casavant">N Carol Casavant</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333</wicri:regionArea><wicri:noRegion>83844-2333</wicri:noRegion></affiliation></author><author><name sortKey="Sonnen, Timothy J" sort="Sonnen, Timothy J" uniqKey="Sonnen T" first="Timothy J" last="Sonnen">Timothy J. Sonnen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Computer Science, Moscow, ID, 83844-1010, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, Moscow, ID, 83844-1010</wicri:regionArea><wicri:noRegion>83844-1010</wicri:noRegion></affiliation></author><author><name sortKey="Kuhl, Joseph C" sort="Kuhl, Joseph C" uniqKey="Kuhl J" first="Joseph C" last="Kuhl">Joseph C. Kuhl</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333</wicri:regionArea><wicri:noRegion>83844-2333</wicri:noRegion></affiliation></author><author><name sortKey="Xiao, Fangming" sort="Xiao, Fangming" uniqKey="Xiao F" first="Fangming" last="Xiao">Fangming Xiao</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333</wicri:regionArea><wicri:noRegion>83844-2333</wicri:noRegion></affiliation></author><author><name sortKey="Dandurand, Louise Marie" sort="Dandurand, Louise Marie" uniqKey="Dandurand L" first="Louise-Marie" last="Dandurand">Louise-Marie Dandurand</name><affiliation wicri:level="1"><nlm:affiliation>Department of Entomology, Plant Pathology, and Nematology, University of Idaho, Moscow, ID, 83844-2329, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Entomology, Plant Pathology, and Nematology, University of Idaho, Moscow, ID, 83844-2329</wicri:regionArea><wicri:noRegion>83844-2329</wicri:noRegion></affiliation></author><author><name sortKey="Caplan, Allan B" sort="Caplan, Allan B" uniqKey="Caplan A" first="Allan B" last="Caplan">Allan B. Caplan</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333</wicri:regionArea><wicri:noRegion>83844-2333</wicri:noRegion></affiliation></author></analytic><series><title level="j">The plant genome</title><idno type="eISSN">1940-3372</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Many researchers today are looking for mechanisms underlying plant defenses against nematodes by identifying differentially expressed genes in domesticated hosts. In order to provide a different perspective, we analyzed the root transcriptome of an undomesticated non-host species, Solanum sisymbriifolium Lamark (SSI) before and after Globodera pallida infection. Utilizing RNAseq analyses, we identified changes in the expression of 277 transcripts. Many of these genes were not annotated; however, the annotated set included peroxidases, reactive oxygen species-producing proteins, and regulators of cell death. Importantly, 60% of the nematode-responsive genes did not respond to physical damage to root tissues, or to exogenous treatments with either salicylic acid or methyl jasmonate. Based on this, we speculate that the majority of changes in SSI gene expression were promoted by either nematode effectors, pathogen-associated molecular patterns (PAMPs), or by exposure to untested endogenous signaling molecules such as ethylene, or by exposure to multiple stimuli. This study incorporates our findings into a model that accounts for part of this plant's unusual resistance to nematodes.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">33016605</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1940-3372</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><Issue>2</Issue><PubDate><Year>2020</Year><Month>Jul</Month></PubDate></JournalIssue><Title>The plant genome</Title><ISOAbbreviation>Plant Genome</ISOAbbreviation></Journal><ArticleTitle>Initial responses of the trap-crop, Solanum sisymbriifolium, to Globodera pallida invasions.</ArticleTitle><Pagination><MedlinePgn>e20016</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/tpg2.20016</ELocationID><Abstract><AbstractText>Many researchers today are looking for mechanisms underlying plant defenses against nematodes by identifying differentially expressed genes in domesticated hosts. In order to provide a different perspective, we analyzed the root transcriptome of an undomesticated non-host species, Solanum sisymbriifolium Lamark (SSI) before and after Globodera pallida infection. Utilizing RNAseq analyses, we identified changes in the expression of 277 transcripts. Many of these genes were not annotated; however, the annotated set included peroxidases, reactive oxygen species-producing proteins, and regulators of cell death. Importantly, 60% of the nematode-responsive genes did not respond to physical damage to root tissues, or to exogenous treatments with either salicylic acid or methyl jasmonate. Based on this, we speculate that the majority of changes in SSI gene expression were promoted by either nematode effectors, pathogen-associated molecular patterns (PAMPs), or by exposure to untested endogenous signaling molecules such as ethylene, or by exposure to multiple stimuli. This study incorporates our findings into a model that accounts for part of this plant's unusual resistance to nematodes.</AbstractText><CopyrightInformation>© 2020 The Authors. The Plant Genome published by Wiley Periodicals, Inc. on behalf of Crop Science Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wixom</LastName><ForeName>Alexander Q</ForeName><Initials>AQ</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-2982-7303</Identifier><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Casavant</LastName><ForeName>N Carol</ForeName><Initials>NC</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sonnen</LastName><ForeName>Timothy J</ForeName><Initials>TJ</Initials><AffiliationInfo><Affiliation>Department of Computer Science, Moscow, ID, 83844-1010, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kuhl</LastName><ForeName>Joseph C</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xiao</LastName><ForeName>Fangming</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dandurand</LastName><ForeName>Louise-Marie</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Department of Entomology, Plant Pathology, and Nematology, University of Idaho, Moscow, ID, 83844-2329, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Caplan</LastName><ForeName>Allan B</ForeName><Initials>AB</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-1139-3124</Identifier><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Idaho, Moscow, ID, 83844-2333, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><Agency>Northwest Potato Consortium</Agency><Country></Country></Grant><Grant><Agency>Idaho Potato Commission</Agency><Country></Country></Grant><Grant><Agency>USDA-APHIS Farm Bill 10201, 10007</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>04</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Genome</MedlineTA><NlmUniqueID>101273919</NlmUniqueID><ISSNLinking>1940-3372</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>07</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>01</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>02</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>5</Day><Hour>8</Hour><Minute>44</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33016605</ArticleId><ArticleId IdType="doi">10.1002/tpg2.20016</ArticleId></ArticleIdList><ReferenceList><Title>REFERENCES</Title><Reference><Citation>Ali, S., Magne, M., Chen, S., Cote, O., Stare, B. 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Plant & Cell Physiology, 56, 414-420.</Citation></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Wixom, Alexander Q" sort="Wixom, Alexander Q" uniqKey="Wixom A" first="Alexander Q" last="Wixom">Alexander Q. Wixom</name></noRegion><name sortKey="Caplan, Allan B" sort="Caplan, Allan B" uniqKey="Caplan A" first="Allan B" last="Caplan">Allan B. Caplan</name><name sortKey="Casavant, N Carol" sort="Casavant, N Carol" uniqKey="Casavant N" first="N Carol" last="Casavant">N Carol Casavant</name><name sortKey="Dandurand, Louise Marie" sort="Dandurand, Louise Marie" uniqKey="Dandurand L" first="Louise-Marie" last="Dandurand">Louise-Marie Dandurand</name><name sortKey="Kuhl, Joseph C" sort="Kuhl, Joseph C" uniqKey="Kuhl J" first="Joseph C" last="Kuhl">Joseph C. Kuhl</name><name sortKey="Sonnen, Timothy J" sort="Sonnen, Timothy J" uniqKey="Sonnen T" first="Timothy J" last="Sonnen">Timothy J. Sonnen</name><name sortKey="Xiao, Fangming" sort="Xiao, Fangming" uniqKey="Xiao F" first="Fangming" last="Xiao">Fangming Xiao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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